Prof. Dr. Burkhard Morgenstern
Universität Göttingen
Institut für Mikrobiologie und Genetik
Abteilung für Bioinformatik
Goldschmidtstr. 1, Raum 2.167
37077 Göttingen
Germany
My spam-protected E-mail is:
bmorgen AT gwdg DOT de
| Phone: | +49 551 39-14628 |
| Secretary: | +49 551 39-14966 |
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Prot-SpaM, Multi-SpaM, spaced words, kmacs and rasbhari.
Visit our journal: Algorithms for Molecular Biology
Publications (for citations etc., see ResearcherID, Research Gate or Google Scholar)
- Selected recent papers:
- C.-A. Leimeister, T. Dencker, B. Morgenstern (2018)
Accurate multiple alignment of distantly related genome sequences using Filtered Spaced Word Matches as anchor points
Bioinformatics, doi:10.1093/bioinformatics/bty592 -
C.-A. Leimeister, J. Schellhorn, S. Schöbel, M. Gerth, C. Bleidorn,
B. Morgenstern (2018)
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
bioRxiv, https://doi.org/10.1101/306142 - T. Dencker, C.-A. Leimeister, M. Gerth, C. Bleidorn, S. Snir, B. Morgenstern (2018)
Multi-SpaM: a Maximum-Likelihood approach to Phylogeny reconstruction based on Multiple Spaced-Word Matches
In: M. Blanchette, A. Ouangraoua (Eds.), Comparative Genomics, LNBI 11183, Springer, Proc. RECOMB-CG 2018.
Preprint available at: arXiv:1803.09222 [q-bio.PE]
- B. Morgenstern (2018)
Fake scientists on editorial boards can significantly enhance the visibility of junk journals
Book chapter, to appear.
See also the slides from my talk at Gaming Metrics: Innovation & Surveillance in Academic Misconduct, UC Davis.
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B. Morgenstern, S. Schöbel, C.-A. Leimeister (2017)
Phylogeny reconstruction based on the length distribution of k-mismatch common substrings
Algorithms for Molecular Biology 12, 27 - C.-A. Leimeister, S. Sohrabi-Jahromi, B. Morgenstern (2017)
Fast and Accurate Phylogeny Reconstruction using Filtered Spaced-Word Matches
Bioinformatics 33, 971-979 - L. Hahn, C.-A. Leimeister, R. Ounit, S. Lonardi, B. Morgenstern (2016)
rasbhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison
PLOS Computational Biology 12, e1005107
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B. Morgenstern, B. Zhu, S. Horwege, C.-A Leimeister (2015)
Estimating evolutionary distances between genomic sequences from spaced-word matches
Algorithms for Molecular Biology 10, 5 -
C.-A. Leimeister, B. Morgenstern (2014)
kmacs: the k-Mismatch Average Common Substring Approach to alignment-free sequence comparison
Bioinformatics 30, 2000-2008 -
C.-A. Leimeister, M. Boden, S. Horwege, S. Lindner, B. Morgenstern (2014)
Fast alignment-free sequence comparison using spaced-word frequencies
Bioinformatics 30, 1991-1999 -
L. Al Ait, Z. Yamak, B. Morgenstern (2013)
DIALIGN at GOBICS - multiple sequence alignment using various sources of external information
Nuc. Acids Research 41, W3-W7
- C.-A. Leimeister, T. Dencker, B. Morgenstern (2018)
- B.M. Full publication list
- Department publication list
Short CV
Created by Burkhard Morgenstern.
Last modified: September 2018