Burkhard Morgenstern, full publication list For citations etc. see ResearcherID and Google Scholar |
2019
- B. Morgenstern (2019)
Der Metrik-Wahn
Laborjournal 7-8, 22-25 -
A. Zielezinski, H.Z. Girgis, G. Bernard, C.-A. Leimeister, K. Tang,
T. Dencker, A.K. Lau, S. Röhling, J. Choi, M.S. Waterman, M. Comin,
S.-H. Kim, S. Vinga, J.S. Almeida, C.X. Chan, B. James, F. Sun,
B. Morgenstern, W.M. Karlowski (2019)
Benchmarking of alignment-free sequence comparison methods
Genome Biology 20, 144
-
C.-A. Leimeister, J. Schellhorn, S. Dörrer, M. Gerth, C. Bleidorn,
B. Morgenstern (2019)
Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences
GigaScience 8, giy148.
- A.K. Lau, C.-A. Leimeister, S. Dörrer, C. Bleidorn,
B. Morgenstern (2019)
Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
bioRxiv, doi:10.1101/550632v4
- S. Röhling, T. Dencker, B. Morgenstern (2019)
The number of k-mer matches between two DNA sequences as a function of k
bioRxiv, doi:10.1101/527515v2
- B. Morgenstern (2019)
Fake scientists on editorial boards can significantly enhance the visibility of junk journals.
In: Mario Biagioli and Alexandra Lippman (Eds.)
Metrics and Misconduct: New Ecologies of Academic Research. MIT Press, to appear.
- C.-A. Leimeister, T. Dencker, B. Morgenstern (2019)
Accurate multiple alignment of distantly related genome sequences using Filtered Spaced Word Matches as anchor points
Bioinformatics 35, 211-218
2018
- T. Dencker, C.-A. Leimeister, M. Gerth, C. Bleidorn, S. Snir, B. Morgenstern
(2018)
Multi-SpaM: a Maximum-Likelihood approach to Phylogeny reconstruction bas ed on Multiple Spaced-Word Matches
In: M. Blanchette, A. Ouangraoua (Eds.), Comparative Genomics, LNBI 11183, Springer, Proc. RECOMB-CG 2018.
Preprint available at: arXiv:1803.09222 [q-bio.PE]
2017
-
B. Morgenstern, S. Schöbel, C.-A. Leimeister (2017)
Phylogeny reconstruction based on the length distribution of k-mismatch common substrings
Algorithms for Molecular Biology 12, 27 -
C.-A. Leimeister, S. Sohrabi-Jahromi, B. Morgenstern (2017)
Fast and Accurate Phylogeny Reconstruction using Filtered Spaced-Word Matches
German Conference on Bioinformatics (GCB17), highlight talk - C.-A. Leimeister, S. Sohrabi-Jahromi, B. Morgenstern (2017)
Fast and Accurate Phylogeny Reconstruction using Filtered Spaced-Word Matches
Bioinformatics 33, 971-979
2016
- C.-A. Leimeister, L. Hahn, B. Morgenstern (2016)
Fast alignment-free phylogeny reconstruction using spaced words
Invited talk, SeqBio 2016, Nantes - L. Hahn, C.-A. Leimeister, R. Ounit, S. Lonardi, B. Morgenstern (2016)
rasbhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison
PLOS Computational Biology 12, e1005107
2015
-
C.-A. Leimeister, M. Boden, Lindner, S. Horwege, B. Morgenstern (2015)
Fast alignment-free sequence comparison using spaced-word frequencies
German Conference on Bioinformatics (GCB15), highlight talk -
C. Schmitt-Engel, D. Schultheis, J. Schwirz, N. Ströhlein, N. Troelenberg,
U. Majumdar, V.A. Dao, D. Grossmann, T. Richter, M. Tech, J. Dönitz, L. Gerischer, M. Theis,
I. Schild, J. Trauner, N. Koniszewski, E. Küster, S. Kittelmann, Y. Hu,
S. Lehmann, J. Siemanowski, J. Ulrich, K. Panfilio, R. Schröder, B. Morgenstern,
M. Stanke, F. Buchholz, M. Frasch, S. Roth, E. Wimmer, M. Schoppmeier, M. Klingler, and G. Bucher (2015)
The iBeetle large scale RNAi screen reveals novel gene functions for insect development and physiology
Nature Communications 6, 7822 -
B. Morgenstern, B. Zhu, S. Horwege, C.-A Leimeister (2015)
Estimating evolutionary distances between genomic sequences from spaced-word matches
Algorithms for Molecular Biology 10, 5 -
A. Kaever, M. Landesfeind, K. Feussner, A. Mosblech, I. Heilmann,
B. Morgenstern, I. Feussner, P. Meinicke (2015)
MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data
Metabolomics 11, 764-777
2014
- D Brown, B. Morgenstern (Eds.)
Algorithms in Bioinformatics
Proc. 14th International Workshop on Algorithms in Bioinformatics, WABI 2014
Lecture Notes in Bioinformatics 8701
Springer Verlag -
B. Morgenstern, B. Zhu, S. Horwege, C.-A. Leimeister (2014)
Estimating evolutionary distances from spaced-word matches
In: Proceedings WABI 2014, Lecture Notes in Bioinformatics 8701, pp. 161-173
Springer Verlag -
C.-A. Leimeister, B. Morgenstern (2014)
kmacs: the k-Mismatch Average Common Substring Approach to alignment-free sequence comparison
Bioinformatics 30, 2000-2008 -
C.-A. Leimeister, M. Boden, S. Horwege, S. Lindner, B. Morgenstern (2014)
Fast alignment-free sequence comparison using spaced-word frequencies
Bioinformatics 30, 1991-1999 -
S. Horwege, S. Lindner, M. Boden, K. Hatje, M. Kollmar,
C.-A. Leimeister, B. Morgenstern (2014)
Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches
Nuc. Acids Research 42, W7-W11 -
A. Kaever, M. Landesfeind, K. Feussner, B. Morgenstern, I. Feussner, P. Meinicke (2014)
Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets
PLoS ONE, 9(2): e89297 -
B. Morgenstern (2014)
Multiple sequence alignment with DIALIGN (book chapter)
In: Multiple Sequence Alignment Methods, pp. 191-202.
Humana Press -
G. Wörheide, T. Nosenko, F. Schreiber, B. Morgenstern (2014)
Progress and perspectives of the deep non-bilaterian phylogeny, with focus on sponges (book chapter)
In: Deep Metazoan Phylogeny: The Backbone of the Tree of Life, pp. 9-22.
De Gruyter
2013
-
T. Beißbarth, M. Kollmar, A. Leha, B. Morgenstern,
A.-K. Schultz, S. Waack, E. Wingender (Eds.):
Proc. German Conference on Bioinformatics 2013, GCB 2013
OASICS ISBN 978-3-939897-59-0, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2013 -
M. Boden, M. Schöneich, S. Horwege, S. Lindner, C. Leimeister,
B. Morgenstern (2013)
Alignment-free sequence comparison with spaced k-mers
Proceedings German Conference on Bioinformatics (GCB'13), 21-31 (regular paper). -
L. Al Ait, Z. Yamak, B. Morgenstern (2013)
DIALIGN at GOBICS - multiple sequence alignment using various sources of external information
Nuc. Acids Research 41, W3-W7
2012
-
L. Al Ait, E. Corel, B. Morgenstern (2012)
Using protein-domain information for multiple sequence alignment
Proceedings IEEE 12th Int. Conf. on BioInformatics and BioEngineering (BIBE 12), pp. 164-168 -
A.-K. Schultz, I. Bulla, M. Abdou-Chekaraou, E. Gordien,
B. Morgenstern, F. Zoulim, P. Dény, M. Stanke (2012)
jpHMM: Recombination analysis in viruses with circular genomes such as the hepatitis B virus
Nuc. Acids Res. 40, W193-W198
2011
-
C.V.C. Truong, L.F. Groeneveld, B. Morgenstern, E. Groeneveld (2011)
MolabIS - An Integrated Information System for Storing and Managing Molecular Genetics Data
BMC Bioinformatics 2011, 12:425 -
T. Unterthiner, A.-K. Schultz, J. Bulla, B. Morgenstern, M. Stanke, I. Bulla (2011)
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
BMC Bioinformatics 2011, 12:93 -
N. Rachfall, I. Heinemeyer, B. Morgenstern, O. Valerius, G. Braus (2011)
5'TRU: Identification and analysis of translationally regulative 5'untranslated regions in amino acid starved yeast cells
Mol Cell Proteomics 10: M110.003350. -
T. Lingner, A.R. Kataya, G.E. Antonicelli, A. Benichou, K. Nilssen,
X.-Y. Chen, T. Siemsen, B. Morgenstern, P. Meinicke,
and S. Reumann (2011)
Identification of New Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and In Vivo Subcellular Targeting Analyses
Plant Cell 23:1556-1572.
2010
-
A.R. Subramanian, S. Hiran, R. Steinkamp, P. Meinicke, E. Corel,
B.Morgenstern (2010)
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
Nucleic Acids Res. 38, W19-W22 -
I. Bulla, A.-K. Schultz, F. Schreiber, M. Zhang,
T. Leitner, B. Korber, B. Morgenstern, M. Stanke (2010)
HIV Classification using Coalescent Theory
Bioinformatics 26, 1409-1415. -
K. Hoff, M. Tech, T. Lingner, R. Daniel, B. Morgenstern, P. Meinicke (2010)
Gene prediction in metagenomic fragments with Orphelia: a large scale machine learning approach (book chapter)
To appear. - K. Pick, F. Schreiber, D. Erpenbeck, D.J. Jackson, P. Wrede,
M. Wiens, A. Alié, B. Morgenstern, M. Manuel, G. Wörheide (2010)
Broader phylogenomic sampling improves the accuracy of non-bilaterian relationships
Mol. Biol. Evol. 27, 1983-1987. - M. Zhang, B. Foley, A.-K. Schultz, J. Macke, I. Bulla, M. Stanke, B. Morgenstern, B. Korber and T. Leitner (2010)
The role of recombination in the emergence of a complex and dynamic HIV epidemic
Retrovirology 7:25 -
E. Corel, F. Pitschi, B. Morgenstern (2010)
A min-cut Algorithm for the Consistency Problem in Multiple Sequence Alignment
Bioinformatics 26, 1015-1021. (PDF)
2009
-
C. Göbel, K. Feussner, A. Kaever, P. Meinicke, B. Morgenstern,
I. Feussner (2009)
Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach
Chemistry and Physics of Lipids 160, S26 -
F. Schreiber, K. Pick, D. Erpenbeck, G. Wörheide,
B. Morgenstern (2009)
OrthoSelect: a protocol for selecting orthologous groups in phylogenomics
BMC Bioinformatics 10, 219 - F. Schreiber, G. Wörheide, B. Morgenstern (2009)
OrthoSelect: A web server for selecting orthologous gene alignments from EST sequences
Nucleic Acids Research 37, W185-W188. - A.-K. Schultz, M. Zhang, I. Bulla, T. Leitner, B. Korber,
B. Morgenstern, M. Stanke (2009)
jpHMM: Improving the reliability of recombination prediction in HIV-1
Nucleic Acids Research 37, W647-W651. - C. Schmeisser, H. Liesegang, D. Krysciak, N. Bakkou,
A. LeQuéré, A. Wollherr, I. Heinemeyer,
B. Morgenstern,
A. Pommerening-Röser, M. Flores, R. Palacios, S. Brenner,
G. Gottschalk, R. Schmitz, W. Broughton, X. Perret, A. Strittmatter,
W. Streit (2009)
Rhizobium sp. NGR234 possesses a remarkable number of secretion systems
Applied and Environmental Microbiology 75, 4035-4045. - H. Philippe, R. Derelle, P. Lopez, K. Pick, C. Borchiellini,
N. Boury-Esnault, J. Vacelet, E. Renard, E. Houliston,
E. Quéinnec, C. Da Silva, P. Wincker, H. Le Guyader, S. Leys,
D.J. Jackson, F. Schreiber , D. Erpenbeck,
B. Morgenstern, G. Wörheide, and M. Manuel (2009)
Phylogenomics restores traditional views on deep animal relationships
Current Biology 19, 706-712. - B. Morgenstern
Local versus global alignment (book chapter)
In: Sequence Alignment, pp. 39 - 53.
University of California Press. -
D. Sommerfeld, T. Lingner, M. Stanke, B. Morgenstern, H. Richter
AUGUSTUS at MediGRID: Adaption of a Bioinformatics Application to Grid Computing for Efficient Genome Analysis
Future Generation Computer Systems 25, 337 - 345.
2008
-
A. Dress, B. Morgenstern, H. Wagner
Stability of Multiple Alignments and Phylogenetic Trees: An Analysis of ABC-Transporter Proteins
Algorithms for Molecular Biology 3, 15. -
A. Weiberg, D. Pöhler, B. Morgenstern, P. Karlovsky
Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA
BMC Genomics 9, 480. -
P. Meinicke, T. Lingner, A. Kaever, K. Feussner, C. Gobel, I. Feussner, P. Karlovsky, B. Morgenstern
Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps
Algorithms for Molecular Biology 3, 9. -
A.R. Subramanian, M. Kaufmann, B. Morgenstern
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Algorithms for Molecular Biology 3, 6. -
K. J. Hoff, M. Tech, T. Lingner, R. Daniel, B. Morgenstern, P. Meinicke
Gene prediction in metagenomic fragments: a large scale machine learning approach
BMC Bioinformatics 9, 217 -
The Tribolium Genome Sequencing Consortium
The genome of the beetle developmental model and pest Tribolium castaneum
Nature 452, 949-955. - A.-K. Schultz, M. Zhang, T. Leitner, B. Korber,
B. Morgenstern, M. Stanke
jpHMM: Erkennung von Rekombinationen bei HIV
BIOforum 2/2008, 44-46.
2007
-
L. Taher, P. Meinicke, B. Morgenstern
On splice site prediction using weight array models: a comparison of smoothing techniques
Journal of Physics: Conference Series 90, 012004 -
X.H. Chen, A. Koumoutsi, R. Scholz, A. Eisenreich, K. Schneider,
I. Heinemeyer, B. Morgenstern, B. Voss, W.R. Hess, O. Reva,
H. Junge, B. Voigt, P. R. Jungblut, J. Vater, R. Süssmuth,
H. Liesegang, A. Strittmatter, G. Gottschalk, R. Borriss
Genomanalyse eines phytostimulatorischen Bacillus-Stammes
Genomxpress 3.07, 11-13. -
X.H. Chen, A. Koumoutsi, H. Liesegang, A. Strittmatter, O. Reva,
R. Scholz, A. Eisenreich, K. Schneider, J. Vater, I. Heinemeyer,
B. Morgenstern, B. Voss, W.R. Hess, B. Voigt, P. R. Jungblut,
H. Junge, R. Süssmuth, G. Gottschalk, R. Borriss
Comparative analysis of the complete genome sequence of the plant growth promoting Bacillus amyloliquefaciens FZB42
Nature Biotechnology 25, 1007 - 1014. - B. Morgenstern
Computational Genome Analysis by R.C. Deonier, S. Tavare and M.S. Waterman (book review)
Biometrical Journal 49, 789. - B. Morgenstern
Multiple sequence alignment (book chapter)
In: Bioinformatics (Methods Express Series), pp. 245 - 264
Scion Publishing Ltd. - B. Morgenstern
Alignment of genomic sequences using DIALIGN (book chapter)
In: Comparative Genomics, pp. 195 - 203.
Humana Press
2006
- A.-K. Schultz, M. Zhang, T. Leitner, C. Kuiken, B. Korber,
B. Morgenstern, M. Stanke
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
BMC Bioinformatics 7, 265. - B. Morgenstern, S.J. Prohaska, D. Pöhler, P.F. Stadler
Multiple sequence alignment with user-defined anchor points
Algorithms for Molecular Biology 1,6. -
M. Stanke, A. Tzvetkova, B. Morgenstern
AUGUSTUS+ at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.
Genome Biology 7, S11. -
M. Tech, B. Morgenstern, P. Meinicke
TICO: a Tool for Post Processing the Predictions of Prokaryotic Translation Initiation Sites
Nucleic Acids Res. 34, W588 - W590. -
M. Zhang, A.-K. Schultz, C. Calef, C. Kuiken, T. Leitner,
B. Korber, B. Morgenstern, M. Stanke
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1
Nucleic Acids Res. 34, W463 - W465. -
M. Stanke , O. Keller, I. Gunduz, A. Hayes, S. Waack,
B. Morgenstern
AUGUSTUS: ab initio prediction of alternative transcripts
Nucleic Acids Res. 34, W435 - W439. - B. Morgenstern and P.F. Stadler
Editorial: New journal: Algorithms for Molecular Biology
Algorithms for Molecular Biology1,1. -
M. Stanke , O. Schöffmann, B. Morgenstern, S. Waack
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
BMC Bioinformatics 7, 62.
2005
- M. Stanke and B. Morgenstern
AUGUSTUS: Genvorhersage in Eukaryoten mit Hidden-Markov-Modellen und vergleichender Sequenzanalyse
BIOforum 9/2005, 45 - 47. - M. Zhang, A.-K. Schultz, B. Morgenstern, M. Stanke, B. Korber,
T. Leitner
Greater HIV Genome Diversities Inferred From Re-subtyping of HIV Database Sequences
Proc. German Conference on Bioinformatics (Discovery Notes, Poster Abstracts), pp 5 - 7. - M. Tech, N. Pfeifer, B. Morgenstern, P. Meinicke
TICO: a tool for improving predictions of prokaryotic translation initiation sites
Bioinformatics 21, 3568 - 3569. - M. Stanke and B. Morgenstern
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
Nucleic Acids Res. 33, W465 - W467. - A.R. Subramanian, J. Weyer-Menkhoff,
M. Kaufmann, B. Morgenstern
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
BMC Bioinformatics 6, 66. -
D. Pöhler, N. Werner, R. Steinkamp, B. Morgenstern
Multiple Alignment of Genomic Sequences using CHAOS, DIALIGN and ABC
Nucleic Acids Res. 33, W532 - W534. -
B. Morgenstern, N. Werner, S.J. Prohaska, R. Steinkamp,
I. Schneider, A.R. Subramanian, P.F. Stadler, J. Weyer-Menkhoff
Multiple sequence alignment with user-defined constraints at GOBICS
Bioinformatics 21, 1271-1273. - B. Morgenstern (2005)
Gene structure prediction by genomic sequence alignment (book chapter)
In: Genetics, Genomics, Proteomics and Bioinformatics
John Wiley & Sons
2004
-
P. Meinicke, M. Tech, B. Morgenstern, R. Merkl (2004)
Oligo Kernels for datamining on biological sequences: A case study on prokaryotic translation initiation sites
BMC Bioinformatics 5, 169. -
B. Morgenstern, S.J. Prohaska, N. Werner, J. Weyer-Menkhoff,
I. Schneider, A.R. Subramanian, P.F. Stadler (2004)
Multiple sequence alignment with user-defined constraints (preprint)
Proceedings of the German Conference on Bioinformatics 2004
Lecture Notes in Informatics P-53, 25-36. -
M. Schmollinger, K. Nieselt, M. Kaufmann, B. Morgenstern (2004)
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
BMC Bioinformatics 5, 128. -
L. Taher, O. Rinner, S. Garg, A. Sczyrba, B. Morgenstern (2004)
AGenDA: Gene Prediction by Cross-Species Sequence Comparison
Nucleic Acids Res. 32, W305-W308. -
M. Stanke, R. Steinkamp, S. Waack, B. Morgenstern (2004)
AUGUSTUS: a web server for gene finding in eukaryotes
Nucleic Acids Res. 32, W309-W312. -
B. Morgenstern (2004)
DIALIGN: Multiple DNA and Protein Sequence Alignment at BiBiServ
Nucleic Acids Res. 32, W33-W36. -
M. Brudno, R. Steinkamp, B. Morgenstern (2004)
The CHAOS/DIALIGN WWW server for Multiple Alignment of Genomic Sequences
Nucleic Acids Res. 32, W41-W44.
2003
-
M. Brudno, M. Chapman, B. Göttgens, S. Batzoglou, B. Morgenstern (2003)
Fast and sensitive multiple alignment of large genomic sequences
BMC Bioinformatics 4, 66. -
M. Sammeth, B. Morgenstern, J. Stoye (2003)
Divide-and-Conquer Multiple Alignment with Segment-Based Constraints
Bioinformatics 19, ii189-ii195 (ECCB 2003 special issue). -
L. Taher, O. Rinner, S. Garg, A. Sczyrba, M. Brudno, S. Batzoglou, B. Morgenstern (2003)
AGenDA: Homology-based gene prediction
Bioinformatics 19, 1575-1577. -
B. Morgenstern, S. Goel, A. Sczyrba, A. Dress (2003)
AltAVisT: Comparing alternative multiple alignments
Bioinformatics 19, 425-426. PDF
2002
-
B. Morgenstern, O. Rinner, S. Abdeddaïm, D. Haase, K. Mayer,
A. Dress, H.-W. Mewes (2002)
Exon Discovery by Genomic Sequence Alignment.
Bioinformatics 18, 777-787. PDF -
O. Rinner and B. Morgenstern (2002)
AGenDA: Gene prediction by comparative sequence analysis.
In Silico Biology 2, 195-205. -
M. Brudno
and B. Morgenstern (2002)
Fast and sensitive alignment of large genomic sequences. (Abstract)
Proceedings IEEE Computer Society Bioinformatics Conference, Stanford University, pp. 138-147. - H.-W. Mewes, D. Frishman, U. Güldener, G. Mannhaupt, K. Mayer, M. Mokrejs,
B. Morgenstern, M. Münsterkötter, S. Rudd, and B. Weil (2002)
MIPS: a database for genomes and protein sequences
Nucleic Acids Res. 30, 31-34. -
B. Morgenstern (2002)
A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences.
Appl. Math. Lett. 15, 11-16. PDF
2001
-
B. Geier, G. Kastenmüller, M. Fellenberg,
H.-W. Mewes, B. Morgenstern (2001)
The HIB database of annotated UniGene clusters.
Bioinformatics 17, 571-572. PDF -
S. Abdeddaïm and B. Morgenstern (2001)
Speeding up the DIALIGN multiple alignment program by using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB)
Lecture Notes in Computer Science 2066, 1-11. PDF -
O. Rinner and B. Morgenstern (2001)
Gene prediction by comparative sequence analysis. (Abstract)
Proceedings German Conference on Bioinformatics (GCB'01), pp. 131-134. -
B. Morgenstern, O. Rinner, S. Abdeddaïm, D. Haase, K. Mayer,
A. Dress, H.-W. Mewes
(2001)
Exon prediction by comparative sequence analysis.
Human Genome Meeting 2001, Edinburgh, U.K. (Abstract)
Programme and Abstract book, pp. 146-147.
2000
-
B. Morgenstern (2000)
A space-efficient algorithm for aligning large genomic sequences.
Bioinformatics 16, 948-949. -
The Arabidopsis Genome
Initiative (2000)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
Nature 408, 796-815. -
S. Abdeddaïm and B. Morgenstern (2000)
Speeding up the DIALIGN multiple alignment program by using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB)
Proceedings Journées Ouvertes: Biologie, Informatique, Mathématiques (JOBIM'00), pp. 1-8.
1999
-
B. Morgenstern and
W.R. Atchley
(1999)
Evolution of bHLH transcription factors: modular evolution by domain shuffling?
Mol. Biol. Evol. 16, 1654-1663. -
B. Morgenstern (1999)
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.
Bioinformatics 15, 211-218. -
H.-P. Lenhof,
B. Morgenstern,
K. Reinert
(1999)
An exact solution for the segment-to-segment multiple sequence alignment problem.
Bioinformatics 15, 203-210.
1998
-
A. Dress, B. Morgenstern,
J. Stoye
(1998)
The Number of Standard and of Effective Multiple Alignments
Appl. Math. Lett. 11(4), 43-49. preprint -
B. Morgenstern, K. Frech, A. Dress, T. Werner (1998)
DIALIGN: Finding local similarities by multiple sequence alignment.
Bioinformatics 14, 290-294. -
H.-P. Lenhof, B. Morgenstern,
K. Reinert (1998)
An exact solution for the segment-to-segment multiple sequence alignment problem.
Proceedings German Conference on Bioinformatics (GCB'98) -
B. Morgenstern, W.R. Atchley, K. Hahn, A. Dress (1998)
Segment-based scores for pairwise and multiple sequence alignments.
Proceedings ISMB'98, pp. 115-121. PDF.
1997
-
B. Morgenstern and T. Werner (1997)
DIALIGN: Finding local similarities by multiple sequence alignment.
Proceedings German Conference on Bioinformatics (GCB'97)
1996
-
B. Morgenstern, A. Dress, T. Werner (1996)
Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
Proc. Natl. Acad. Sci. USA 93, 12098-12103. PDF
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Last modified: May 2019